STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfaG-13Glycosyltransferase; COG1216 [R] Predicted glycosyltransferases. (288 aa)    
Predicted Functional Partners:
rfaG-12
COG0463 [M] Glycosyltransferases involved in cell wall biogenesis.
  
  
 0.774
rfaG-14
COG0438 [M] Glycosyltransferase.
  
  
 0.764
LSL_0995
UDP-N-acetylglucosamine 4,6-dehydratase / UDP-D-quinovosamine 4-dehydrogenase; COG1086 [MG] Predicted nucleoside-diphosphate sugar epimerases.
  
  
 0.748
LSL_0985
Conserved hypothetical protein.
       0.746
LSL_0993
UDP-galactose phosphate transferase; COG2148 [M] Sugar transferases involved in lipopolysaccharide synthesis.
  
  
 0.723
rfaG-11
Glycosyltransferase; COG3754 [M] Lipopolysaccharide biosynthesis protein.
       0.678
rfaG-15
COG0438 [M] Glycosyltransferase.
  
  
 0.677
rfbC
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
 
  
 0.633
rfaG-16
COG0438 [M] Glycosyltransferase.
  
  
 0.585
rfaG-17
COG0438 [M] Glycosyltransferase.
  
  
 0.574
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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