Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
wecD-3COG0110 [R] Acetyltransferase (isoleucine patch superfamily). (196 aa)    
Predicted Functional Partners:
LSL_0994
Aminotransferase; COG0399 [M] Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.
   0.989
LSL_0993
UDP-galactose phosphate transferase; COG2148 [M] Sugar transferases involved in lipopolysaccharide synthesis.
    0.988
LSL_1550
Undecaprenyl-phosphate beta-glucosephosphotransferase; COG2148 [M] Sugar transferases involved in lipopolysaccharide synthesis.
 
    0.880
rfaG-17
COG0438 [M] Glycosyltransferase.
     
 0.755
rfaG-16
COG0438 [M] Glycosyltransferase.
     
 0.739
LSL_0995
UDP-N-acetylglucosamine 4,6-dehydratase / UDP-D-quinovosamine 4-dehydrogenase; COG1086 [MG] Predicted nucleoside-diphosphate sugar epimerases.
 
    0.735
rfaG-15
COG0438 [M] Glycosyltransferase.
     
 0.628
LSL_0996
Tyrosine-protein kinase; COG0455 [D] ATPases involved in chromosome partitioning; capsular polysaccharide biosynthesis.
       0.602
LSL_0997
Chain length regulator; COG3944 [M] Capsular polysaccharide biosynthesis protein; capsular polysaccharide biosynthesis.
       0.602
rfaG-13
Glycosyltransferase; COG1216 [R] Predicted glycosyltransferases.
       0.564
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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