STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSL_1000Hypothetical membrane spanning protein. (325 aa)    
Predicted Functional Partners:
LSL_0999
Putative 23S rRNA m(5)C methyltransferase; COG0144 [J] tRNA and rRNA cytosine-C5-methylases.
       0.867
LSL_1001
Conserved hypothetical protein; COG1073 [R] Hydrolases of the alpha/beta superfamily.
 
     0.806
LSL_1007
Conserved hypothetical protein.
  
     0.773
LSL_1315
Transcriptional regulator, MarR family; COG0583 [K] Transcriptional regulator.
  
     0.770
LSL_1483
Hypothetical membrane spanning protein.
  
     0.748
LSL_0168
COG0531 [E] Amino acid transporters.
  
     0.744
LSL_0610
Hypothetical protein.
  
     0.736
LSL_1456
Conserved hypothetical protein.
  
     0.725
wecD-4
Acetyltransferase, GNAT family; COG0454 [KR] Histone acetyltransferase HPA2 and related acetyltransferases.
       0.722
LSL_0606
Hypothetical protein.
  
     0.718
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.