STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSL_1024Response regulator; COG2199 [T] FOG: GGDEF domain. (391 aa)    
Predicted Functional Partners:
LSL_1016
Conserved hypothetical protein; COG2200 [T] FOG: EAL domain.
 
  
 0.938
LSL_1019
N-acetylglucosaminyltransferase; COG1215 [M] Glycosyltransferases, probably involved in cell wall biogenesis.
 
  
 0.867
LSL_1023
Conserved hypothetical protein.
 
   
 0.853
LSL_1020
COG0718 [S] Uncharacterized protein conserved in bacteria.
 
     0.835
LSL_1017
Conserved hypothetical protein; COG2199 [T] FOG: GGDEF domain.
 
     0.829
LSL_1018
Cellulose synthase catalytic subunit; UDP-forming.
 
   
 0.826
LSL_1022
Hypothetical membrane spanning protein.
 
     0.823
LSL_1021
Conserved hypothetical protein.
       0.773
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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