STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
menACOG1575 [H] 1,4-dihydroxy-2-naphthoate octaprenyltransferase. (301 aa)    
Predicted Functional Partners:
ndh
COG1252 [C] NADH dehydrogenase, FAD-containing subunit.
 
    0.953
LSL_1028
Heptaprenyl diphosphate synthase; COG0142 [H] Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
 
   
 0.926
comA
COG2050 [Q] Uncharacterized protein, possibly involved in aromatic compounds catabolism.
    
 0.923
cydC
Transport ATP-binding protein; COG4987 [CO] ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components.
 
   
 0.808
cydD
Transport ATP-binding protein; COG4988 [CO] ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components.
 
     0.782
LSL_0224
COG1257 [I] Hydroxymethylglutaryl-CoA reductase; Belongs to the HMG-CoA reductase family.
   
 
 0.708
cydB
COG1294 [C] Cytochrome bd-type quinol oxidase, subunit 2.
 
     0.588
LSL_1025
COG2252 [R] Permeases.
       0.491
cydA
COG1271 [C] Cytochrome bd-type quinol oxidase, subunit 1.
 
     0.464
menB
Naphthoate synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA).
 
   
 0.461
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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