Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
cydCTransport ATP-binding protein; COG4987 [CO] ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components. (586 aa)    
Predicted Functional Partners:
cydD
Transport ATP-binding protein; COG4988 [CO] ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components.
 
0.999
cydA
COG1271 [C] Cytochrome bd-type quinol oxidase, subunit 1.
  
 0.994
cydB
COG1294 [C] Cytochrome bd-type quinol oxidase, subunit 2.
 
  
 0.992
potA
Spermidine/putrescine transport ATP-binding protein potA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
     
0.864
menA
COG1575 [H] 1,4-dihydroxy-2-naphthoate octaprenyltransferase.
 
   
 0.840
ndh
COG1252 [C] NADH dehydrogenase, FAD-containing subunit.
 
   
 0.807
LSL_1028
Heptaprenyl diphosphate synthase; COG0142 [H] Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
  
     0.763
pstB
Phosphate transport ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.
 
     
0.678
LSL_1695
Oligopeptide transport ATP-binding protein oppF; COG4608 [E] ABC-type oligopeptide transport system, ATPase component; Belongs to the ABC transporter superfamily.
 
     
0.412
asnA
Aspartate--ammonia ligase; COG2502 [E] Asparagine synthetase A.
       0.411
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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