Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
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[Homology]
Score
cydBCOG1294 [C] Cytochrome bd-type quinol oxidase, subunit 2. (338 aa)    
Predicted Functional Partners:
cydA
COG1271 [C] Cytochrome bd-type quinol oxidase, subunit 1.
 0.999
cydD
Transport ATP-binding protein; COG4988 [CO] ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components.
 
  
 0.998
cydC
Transport ATP-binding protein; COG4987 [CO] ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components.
 
  
 0.992
menA
COG1575 [H] 1,4-dihydroxy-2-naphthoate octaprenyltransferase.
 
   
 0.673
ndh
COG1252 [C] NADH dehydrogenase, FAD-containing subunit.
 
   
 0.668
frdA
COG1053 [C] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
     
 0.588
LSL_1028
Heptaprenyl diphosphate synthase; COG0142 [H] Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
  
    0.463
asnA
Aspartate--ammonia ligase; COG2502 [E] Asparagine synthetase A.
       0.411
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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