Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LSL_1034Peptidoglycan binding protein, LysM domain; COG0513 [LKJ] Superfamily II DNA and RNA helicases. (323 aa)    
Predicted Functional Partners:
LSL_1035
COG0607 [P] Rhodanese-related sulfurtransferase.
       0.512
LSL_1141
Copper homeostasis protein cutC.
   
    0.467
asnA
Aspartate--ammonia ligase; COG2502 [E] Asparagine synthetase A.
       0.416
LSL_1088
COG0768 [M] Cell division protein FtsI/penicillin-binding protein 2.
 
 
 
 0.413
LSL_1609
Hypothetical protein.
  
     0.405
LSL_0583
Hypothetical protein.
  
     0.401
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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