STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSL_1060Cell surface hydrolase, membrane-bound; COG1073 [R] Hydrolases of the alpha/beta superfamily. (311 aa)    
Predicted Functional Partners:
LSL_1061
Polar amino acid ABC transporter, substrate binding protein; COG0834 [ET] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
       0.746
LSL_1062
COG1126 [E] ABC-type polar amino acid transport system, ATPase component.
       0.707
LSL_1063
COG0765 [E] ABC-type amino acid transport system, permease component.
  
    0.695
rfaG-22
COG0438 [M] Glycosyltransferase.
 
 
   0.471
fruK
1-phosphofructokinase; COG1105 [G] Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB); Belongs to the carbohydrate kinase PfkB family. LacC subfamily.
   
    0.450
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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