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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cspCCOG1278 [K] Cold shock proteins. (69 aa)    
Predicted Functional Partners:
radC
COG2003 [L] DNA repair proteins; Belongs to the UPF0758 family.
       0.765
folC
COG0285 [H] Folylpolyglutamate synthase; Belongs to the folylpolyglutamate synthase family.
     
 0.627
mscL
Large-conductance mechanosensitive channel; Channel that opens in response to stretch forces in the membrane lipid bilayer. May participate in the regulation of osmotic pressure changes within the cell.
   
  
 0.572
LSL_0885
DNA-binding protein HU; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.
  
 
 0.563
rpsL
SSU ribosomal protein S12P; With S4 and S5 plays an important role in translational accuracy.
   
 
 0.543
rpmE
COG0254 [J] Ribosomal protein L31.
  
 
 0.541
rpsT
SSU ribosomal protein S20P; Binds directly to 16S ribosomal RNA.
   
 
 0.534
rplO
LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
   
   0.523
rpsU
COG0828 [J] Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
  
 
 0.517
nudF
ADP-ribose pyrophosphatase; COG0494 [LR] NTP pyrophosphohydrolases including oxidative damage repair enzymes.
     
 0.514
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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