Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LSL_1089COG0344 [S] Predicted membrane protein. (881 aa)    
Predicted Functional Partners:
LSL_1088
COG0768 [M] Cell division protein FtsI/penicillin-binding protein 2.
 
     0.703
LSL_1271
Cell wall teichoic acid glycosylation protein gtcA; COG0344 [S] Predicted membrane protein.
   
 0.696
rfaG-2
COG0463 [M] Glycosyltransferases involved in cell wall biogenesis.
 
  
 0.621
LSL_1288
Conserved hypothetical protein.
  
     0.585
LSL_0903
COG0718 [S] Uncharacterized protein conserved in bacteria.
  
     0.582
LSL_0393
COG0718 [S] Uncharacterized protein conserved in bacteria.
  
     0.549
mreD
COG1792 [M] Cell shape-determining protein.
  
    0.518
LSL_1448
Hypothetical membrane spanning protein.
  
     0.481
LSL_0901
Conserved hypothetical protein.
  
     0.475
LSL_0225
IpaB/EvcA family protein.
  
     0.469
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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