Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LSL_1193Phage immunity repressor. (126 aa)    
Predicted Functional Partners:
LSL_1192
Phage repressor proteins.
       0.709
LSL_1194
Hypothetical protein.
       0.631
xerC-5
COG0582 [L] Integrase; Belongs to the 'phage' integrase family.
 
    0.608
LSL_1195
Hypothetical protein, phage associated.
       0.602
LSL_1196
Hypothetical protein, phage associated.
       0.602
LSL_1197
Hypothetical protein, phage associated.
       0.602
LSL_1191
Phage transcriptional regulator, Cro/CI family; COG0640 [K] Predicted transcriptional regulators.
 
     0.561
LSL_1190
Hypothetical protein, phage associated.
  
    0.536
xerC-6
COG0582 [L] Integrase; Belongs to the 'phage' integrase family.
 
    0.509
xerC
COG0582 [L] Integrase; Belongs to the 'phage' integrase family.
 
    0.472
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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