STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSL_1271Cell wall teichoic acid glycosylation protein gtcA; COG0344 [S] Predicted membrane protein. (136 aa)    
Predicted Functional Partners:
fldA-2
Flavodoxin; COG0716 [C] Flavodoxins.
       0.847
LSL_1272
COG0344 [S] Predicted membrane protein.
 
  
 0.745
LSL_1089
COG0344 [S] Predicted membrane protein.
  
 0.715
rfaG-2
COG0463 [M] Glycosyltransferases involved in cell wall biogenesis.
 
  
 0.658
map
Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
       0.555
tagH
Teichoic acid translocation ATP-binding protein; COG1134 [GM] ABC-type polysaccharide/polyol phosphate transport system, ATPase component.
  
  
 0.453
galU
UTP--glucose-1-phosphate uridylyltransferase; COG1210 [M] UDP-glucose pyrophosphorylase.
  
  
 0.429
LSL_1266
Ribonuclease BN; COG0344 [S] Predicted membrane protein; Belongs to the UPF0761 family.
 
     0.426
LSL_1234
Hypothetical membrane spanning protein; COG0011 [S] Uncharacterized conserved protein.
  
  
 0.418
LSL_1357
Cell division protein DIVIC; COG2919 [D] Septum formation initiator.
  
    0.404
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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