Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mbp3Mucus binding protein. (785 aa)    
Predicted Functional Partners:
LSL_0335
Hypothetical secreted protein.
  
     0.718
LSL_0334
Hypothetical secreted protein.
  
     0.701
LSL_0926
Zwittermicin A resistance protein zmaR.
  
     0.690
LSL_1085
Hypothetical surface protein; COG3468 [MU] Type V secretory pathway, adhesin AidA.
  
   
 0.604
LSL_0351
Hypothetical secreted protein.
 
   
 0.559
LSL_1516
N-acetylmuramoyl-L-alanine amidase; COG5263 [R] FOG: Glucan-binding domain (YG repeat).
 
  
 0.536
LSL_1606
Sortase; COG3764 [M] Sortase (surface protein transpeptidase).
     
 0.466
draG
COG1397 [O] ADP-ribosylglycohydrolase.
  
     0.465
wecD-11
Acetyltransferase; COG2388 [R] Predicted acetyltransferase.
       0.449
LSL_0906
Hypothetical membrane spanning protein.
  
   
 0.442
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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