Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LSL_1384ABC transporter, ATP-binding protein; COG1131 [V] ABC-type multidrug transport system, ATPase component. (302 aa)    
Predicted Functional Partners:
LSL_1382
Hypothetical membrane spanning protein; COG0718 [S] Uncharacterized protein conserved in bacteria.
 
  
 0.959
cbiO-2
Cobalt transport ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
   
0.908
glnQ-2
Glutamine transport ATP-binding protein; COG1126 [E] ABC-type polar amino acid transport system, ATPase component.
 
     
0.869
LSL_1383
ABC transporter.
  
  
 0.818
LSL_0221
COG0842 [V] ABC-type multidrug transport system, permease component.
  
 0.628
LSL_1459
ABC transporter, ATP-binding protein; COG1136 [V] ABC-type antimicrobial peptide transport system, ATPase component.
  
0.578
LSL_1385
Response regulator receiver.
  
  
 0.572
LSL_0725
Hypothetical ABC transporter permease protein; COG3559 [M] Putative exporter of polyketide antibiotics.
  
 
 0.568
LSL_1375
ABC transporter, ATP-binding protein; COG1136 [V] ABC-type antimicrobial peptide transport system, ATPase component.
  
0.543
LSL_0105
Transcriptional regulator, PadR family; COG0640 [K] Predicted transcriptional regulators.
 
    0.522
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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