STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSL_1458ABC transporter permease protein; COG0577 [V] ABC-type antimicrobial peptide transport system, permease component. (406 aa)    
Predicted Functional Partners:
LSL_1459
ABC transporter, ATP-binding protein; COG1136 [V] ABC-type antimicrobial peptide transport system, ATPase component.
 
 0.999
LSL_1460
Conserved hypothetical protein; COG0845 [M] Membrane-fusion protein.
 
 
 0.997
LSL_1375
ABC transporter, ATP-binding protein; COG1136 [V] ABC-type antimicrobial peptide transport system, ATPase component.
 
 0.974
LSL_1676
Amino acid ABC transporter, ATP-binding protein; COG1136 [V] ABC-type antimicrobial peptide transport system, ATPase component.
 
 
 0.958
glnQ
Glutamine transport ATP-binding protein; COG1126 [E] ABC-type polar amino acid transport system, ATPase component.
 
      0.899
LSL_1062
COG1126 [E] ABC-type polar amino acid transport system, ATPase component.
 
      0.899
LSL_1540
ABC transporter, ATP-binding protein; COG1126 [E] ABC-type polar amino acid transport system, ATPase component.
 
      0.899
LSL_1625
COG1126 [E] ABC-type polar amino acid transport system, ATPase component.
 
      0.899
glnQ-2
Glutamine transport ATP-binding protein; COG1126 [E] ABC-type polar amino acid transport system, ATPase component.
 
      0.895
metN
ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 
      0.877
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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