Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LSL_1487Hypothetical membrane spanning protein. (113 aa)    
Predicted Functional Partners:
azlC
COG1296 [E] Predicted branched-chain amino acid permease (azaleucine resistance).
 
  
 0.968
LSL_0513
Hypothetical protein.
  
     0.763
LSL_0703
Integrase/recombinase xerD.
  
     0.694
LSL_0602
Hypothetical membrane spanning protein.
  
     0.616
LSL_0094
Conserved hypothetical protein.
  
     0.610
azlC-2
COG1296 [E] Predicted branched-chain amino acid permease (azaleucine resistance).
 
  
 0.585
aes
Endo-1,4-beta-xylanase; COG0657 [I] Esterase/lipase.
       0.570
LSL_1489
Hypothetical protein.
       0.542
LSL_1485
Conserved hypothetical protein.
 
     0.540
LSL_0072
Hypothetical protein.
  
     0.534
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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