Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LSL_1535Hypothetical exported protein; COG5263 [R] FOG: Glucan-binding domain (YG repeat). (884 aa)    
Predicted Functional Partners:
LSL_0090
Hypothetical secreted protein; COG1388 [M] FOG: LysM repeat.
  
  
 0.570
LSL_0362
COG2404 [R] Predicted phosphohydrolase (DHH superfamily).
  
     0.494
LSL_1536
Hypothetical membrane spanning protein.
  
    0.494
guaA-3
GMP synthase; Catalyzes the synthesis of GMP from XMP.
       0.466
LSL_0294
COG5283 [S] Phage-related tail protein.
       0.439
LSL_0022
Hypothetical membrane spanning protein; COG0011 [S] Uncharacterized conserved protein.
       0.425
LSL_0384
Conserved hypothetical protein.
 
     0.404
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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