Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LSL_1540ABC transporter, ATP-binding protein; COG1126 [E] ABC-type polar amino acid transport system, ATPase component. (246 aa)    
Predicted Functional Partners:
LSL_1541
COG0834 [ET] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
 0.996
LSL_1063
COG0765 [E] ABC-type amino acid transport system, permease component.
 
 0.985
glnP-3
COG0765 [E] ABC-type amino acid transport system, permease component.
 
 0.955
LSL_1626
COG0765 [E] ABC-type amino acid transport system, permease component.
 
 0.934
glnM
COG0765 [E] ABC-type amino acid transport system, permease component.
 
 0.931
glnP-2
Glutamine-binding protein / Glutamine transport system permease protein; COG0834 [ET] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
 
 0.903
LSL_0212
COG1132 [V] ABC-type multidrug transport system, ATPase and permease components.
 
     
0.900
cydD
Transport ATP-binding protein; COG4988 [CO] ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components.
 
     
0.900
glnP
Glutamine-binding protein / Glutamine transport system permease protein; COG0834 [ET] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
 
 0.899
LSL_1458
ABC transporter permease protein; COG0577 [V] ABC-type antimicrobial peptide transport system, permease component.
 
      0.899
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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