STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSL_1549Conserved hypothetical protein. (293 aa)    
Predicted Functional Partners:
glf
COG0562 [M] UDP-galactopyranose mutase.
  
  
 0.663
LSL_1550
Undecaprenyl-phosphate beta-glucosephosphotransferase; COG2148 [M] Sugar transferases involved in lipopolysaccharide synthesis.
  
  
 0.654
rfbX
Polysacharide biosyntheis protein; COG2244 [R] Membrane protein involved in the export of O-antigen and teichoic acid.
  
  
 0.638
LSL_1565
Conserved hypothetical protein; COG3593 [L] Predicted ATP-dependent endonuclease of the OLD family.
   
  
 0.628
LSL_1547
Oligosaccharide translocase; COG2244 [R] Membrane protein involved in the export of O-antigen and teichoic acid; flippase.
 
    0.626
LSL_0997
Chain length regulator; COG3944 [M] Capsular polysaccharide biosynthesis protein; capsular polysaccharide biosynthesis.
  
  
 0.616
LSL_1554
Chain length regulator; COG3944 [M] Capsular polysaccharide biosynthesis protein; capsular polysaccharide biosynthesis.
  
  
 0.616
rfaG-24
Glycosyltransferase.
 
  
 0.538
LSL_1525
Hypothetical membrane spanning protein.
 
    0.526
LSL_0166
Hypothetical membrane spanning protein.
 
    0.500
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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