Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LSL_1553Tyrosine-protein kinase; COG0455 [D] ATPases involved in chromosome partitioning; capsular polysaccharide biosynthesis. (241 aa)    
Predicted Functional Partners:
LSL_0997
Chain length regulator; COG3944 [M] Capsular polysaccharide biosynthesis protein; capsular polysaccharide biosynthesis.
 
 0.990
LSL_1554
Chain length regulator; COG3944 [M] Capsular polysaccharide biosynthesis protein; capsular polysaccharide biosynthesis.
 
 0.987
LSL_1552
Phosphotyrosine-protein phosphatase; COG3944 [M] Capsular polysaccharide biosynthesis protein; capsular polysaccharide biosynthesis.
  
 0.985
LSL_1550
Undecaprenyl-phosphate beta-glucosephosphotransferase; COG2148 [M] Sugar transferases involved in lipopolysaccharide synthesis.
  
  
 0.806
wecB
COG0381 [M] UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
  
 0.597
LSL_0995
UDP-N-acetylglucosamine 4,6-dehydratase / UDP-D-quinovosamine 4-dehydrogenase; COG1086 [MG] Predicted nucleoside-diphosphate sugar epimerases.
  
  
 0.491
LSL_1551
Transcriptional regulator, LytR family; COG0583 [K] Transcriptional regulator.
  
  
 0.488
LSL_0993
UDP-galactose phosphate transferase; COG2148 [M] Sugar transferases involved in lipopolysaccharide synthesis.
  
  
 0.483
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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