STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfaG-21COG0463 [M] Glycosyltransferases involved in cell wall biogenesis. (347 aa)    
Predicted Functional Partners:
rfaG-19
COG0438 [M] Glycosyltransferase.
 
    0.878
rfaG-20
COG0438 [M] Glycosyltransferase.
 
    0.839
LSL_1558
Capsular polysaccharide synthesis protein.
  
    0.809
rfaG-22
COG0438 [M] Glycosyltransferase.
 
    0.800
LSL_1557
Hypothetical membrane spanning protein.
       0.723
rfbX
Polysacharide biosyntheis protein; COG2244 [R] Membrane protein involved in the export of O-antigen and teichoic acid.
  
    0.607
rfaG-16
COG0438 [M] Glycosyltransferase.
 
    0.567
rfaG-15
COG0438 [M] Glycosyltransferase.
 
    0.516
gAlE
UDP-glucose 4-epimerase; COG0451 [MG] Nucleoside-diphosphate-sugar epimerases.
 
    0.410
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.