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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSL_1585COG1108 [P] ABC-type Mn2+/Zn2+ transport systems, permease components. (266 aa)    
Predicted Functional Partners:
LSL_1586
ABC transporter, ATP-binding protein; COG1121 [P] ABC-type Mn/Zn transport systems, ATPase component.
 
 
 0.997
LSL_1587
ABC transporter substrate binding protein; COG0803 [P] ABC-type metal ion transport system, periplasmic component/surface adhesin; Belongs to the bacterial solute-binding protein 9 family.
 
  
 0.993
mntH
Manganese transport protein; COG1914 [P] Mn2+ and Fe2+ transporters of the NRAMP family.
  
  
 0.582
birA
Biotin operon repressor / Biotin--[acetyl-CoA-carboxylase] synthetase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
       0.517
troR
Iron-dependent repressor; COG1321 [K] Mn-dependent transcriptional regulator.
  
  
 0.509
LSL_1626
COG0765 [E] ABC-type amino acid transport system, permease component.
   
 
 0.478
LSL_1063
COG0765 [E] ABC-type amino acid transport system, permease component.
   
 
 0.471
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
       0.463
fur-2
COG0735 [P] Fe2+/Zn2+ uptake regulation proteins; Belongs to the Fur family.
  
  
 0.446
rpmG
COG0267 [J] Ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
     
 0.444
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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