Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LSL_1592Hypothetical membrane spanning protein. (589 aa)    
Predicted Functional Partners:
LSL_1593
COG4858 [S] Uncharacterized membrane-bound protein conserved in bacteria.
 
     0.799
LSL_0166
Hypothetical membrane spanning protein.
  
     0.616
ychF
GTP-binding protein, probable translation factor; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
       0.603
LSL_1525
Hypothetical membrane spanning protein.
  
     0.579
LSL_1595
COG0718 [S] Uncharacterized protein conserved in bacteria.
       0.573
parB
Chromosome partitioning protein, DNA-binding protein; COG0640 [K] Predicted transcriptional regulators; Belongs to the ParB family.
       0.548
LSL_1597
COG0455 [D] ATPases involved in chromosome partitioning.
       0.548
parB-2
Chromosome partitioning protein; COG0640 [K] Predicted transcriptional regulators; Belongs to the ParB family.
       0.521
gidB
Methyltransferase; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
       0.463
LSL_0672
Hypothetical membrane spanning protein.
 
     0.442
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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