STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSL_1617Transcriptional regulator, GntR family; COG0640 [K] Predicted transcriptional regulators. (122 aa)    
Predicted Functional Partners:
LSL_1616
ABC transporter, ATP-binding protein; COG1131 [V] ABC-type multidrug transport system, ATPase component.
  
 0.994
LSL_1614
COG0011 [S] Uncharacterized conserved protein; Belongs to the UPF0145 family.
       0.790
LSL_1615
Hypothetical protein.
       0.773
mtlD
COG0246 [G] Mannitol-1-phosphate/altronate dehydrogenases.
       0.488
LSL_1619
PTS system, mannitol-specific IIA component; COG4668 [G] Mannitol/fructose-specific phosphotransferase system, IIA domain.
       0.488
mtlA
COG2213 [G] Phosphotransferase system, mannitol-specific IIBC component.
       0.473
manA
COG1482 [G] Phosphomannose isomerase; Belongs to the mannose-6-phosphate isomerase type 1 family.
     
 0.436
LSL_0432
COG0827 [L] Adenine-specific DNA methylase.
   
    0.407
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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