STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSL_1622Transcriptional regulator, Cro/CI family; COG0583 [K] Transcriptional regulator. (136 aa)    
Predicted Functional Partners:
LSL_0874
Transcriptional regulator, MarR family; COG0583 [K] Transcriptional regulator.
  
   0.781
LSL_0528
Conserved hypothetical protein.
  
     0.773
LSL_0527
Conserved hypothetical protein.
  
     0.771
LSL_0529
Conserved hypothetical protein.
  
    0.770
LSL_0384
Conserved hypothetical protein.
  
     0.766
LSL_1272
COG0344 [S] Predicted membrane protein.
  
     0.750
LSL_0841
Hypothetical membrane spanning protein.
  
     0.748
LSL_0094
Conserved hypothetical protein.
  
     0.679
mreD
COG1792 [M] Cell shape-determining protein.
  
     0.664
LSL_0648
Hypothetical protein.
  
     0.662
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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