Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LSL_1675ABC transporter permease protein; COG0577 [V] ABC-type antimicrobial peptide transport system, permease component. (856 aa)    
Predicted Functional Partners:
LSL_1676
Amino acid ABC transporter, ATP-binding protein; COG1136 [V] ABC-type antimicrobial peptide transport system, ATPase component.
 
 
 0.986
LSL_0210
ABC transporter, ATP-binding protein; COG1136 [V] ABC-type antimicrobial peptide transport system, ATPase component.
  
 
 0.767
LSL_1375
ABC transporter, ATP-binding protein; COG1136 [V] ABC-type antimicrobial peptide transport system, ATPase component.
 
 
 0.688
LSL_1459
ABC transporter, ATP-binding protein; COG1136 [V] ABC-type antimicrobial peptide transport system, ATPase component.
  
 
 0.641
LSL_1677
Transcriptional regulator, TetR family; COG0583 [K] Transcriptional regulator.
 
    0.623
LSL_1674
Agmatine deiminase; COG2957 [E] Peptidylarginine deiminase and related enzymes; Belongs to the agmatine deiminase family.
  
    0.504
LSL_1210
COG0474 [P] Cation transport ATPase.
 
    0.436
LSL_0680
ComE operon protein 3; COG2248 [R] Predicted hydrolase (metallo-beta-lactamase superfamily).
       0.422
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.