Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LSL_1695Oligopeptide transport ATP-binding protein oppF; COG4608 [E] ABC-type oligopeptide transport system, ATPase component; Belongs to the ABC transporter superfamily. (315 aa)    
Predicted Functional Partners:
oppC
COG0601 [EP] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 0.999
oppB
COG0601 [EP] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 0.999
oppD
COG0444 [EP] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Belongs to the ABC transporter superfamily.
 
 
0.998
LSL_1699
Oligopeptide-binding protein oppA; COG4166 [E] ABC-type oligopeptide transport system, periplasmic component.
 0.997
LSL_0478
ABC transporter, ATP-binding protein; COG1131 [V] ABC-type multidrug transport system, ATPase component.
     
0.899
cbiQ
Cobalt transport permease protein; Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
  
 
 0.858
LSL_0033
Multidrug/protein/lipid ABC transporter family, ATP-binding and permease protein; COG1132 [V] ABC-type multidrug transport system, ATPase and permease components.
    
0.741
cydD
Transport ATP-binding protein; COG4988 [CO] ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components.
 
   
0.655
LSL_1684
ABC transporter, ATP-binding protein; COG1101 [R] ABC-type uncharacterized transport system, ATPase component.
 
     
0.502
LSL_1063
COG0765 [E] ABC-type amino acid transport system, permease component.
 
      0.449
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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