STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oppCCOG0601 [EP] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components. (342 aa)    
Predicted Functional Partners:
LSL_1695
Oligopeptide transport ATP-binding protein oppF; COG4608 [E] ABC-type oligopeptide transport system, ATPase component; Belongs to the ABC transporter superfamily.
 0.999
oppD
COG0444 [EP] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Belongs to the ABC transporter superfamily.
 0.999
oppB
COG0601 [EP] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 0.999
LSL_1699
Oligopeptide-binding protein oppA; COG4166 [E] ABC-type oligopeptide transport system, periplasmic component.
 
 0.998
metN
ABC transporter, ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 
  
 0.905
LSL_1540
ABC transporter, ATP-binding protein; COG1126 [E] ABC-type polar amino acid transport system, ATPase component.
    
 0.899
cbiO
Cobalt transport ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
    
 0.895
glnQ
Glutamine transport ATP-binding protein; COG1126 [E] ABC-type polar amino acid transport system, ATPase component.
    
 0.892
LSL_1459
ABC transporter, ATP-binding protein; COG1136 [V] ABC-type antimicrobial peptide transport system, ATPase component.
 
 
  
 0.890
glnQ-2
Glutamine transport ATP-binding protein; COG1126 [E] ABC-type polar amino acid transport system, ATPase component.
    
 0.867
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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