Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LSL_1699Oligopeptide-binding protein oppA; COG4166 [E] ABC-type oligopeptide transport system, periplasmic component. (537 aa)    
Predicted Functional Partners:
oppB
COG0601 [EP] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 0.999
oppC
COG0601 [EP] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.998
LSL_1695
Oligopeptide transport ATP-binding protein oppF; COG4608 [E] ABC-type oligopeptide transport system, ATPase component; Belongs to the ABC transporter superfamily.
 0.997
oppD
COG0444 [EP] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component; Belongs to the ABC transporter superfamily.
 
 0.997
glnP
Glutamine-binding protein / Glutamine transport system permease protein; COG0834 [ET] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
  
 
 0.512
glnP-2
Glutamine-binding protein / Glutamine transport system permease protein; COG0834 [ET] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
  
 
 0.512
LSL_1541
COG0834 [ET] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
  
 
 0.512
LSL_1585
COG1108 [P] ABC-type Mn2+/Zn2+ transport systems, permease components.
    
 0.425
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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