STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSL_1702Hydrolase, HAD superfamily; COG0561 [R] Predicted hydrolases of the HAD superfamily. (266 aa)    
Predicted Functional Partners:
LSL_0034
Hydrolase, HAD superfamily; COG0561 [R] Predicted hydrolases of the HAD superfamily.
  
     0.774
LSL_0337
Hydrolase, HAD superfamily; COG0561 [R] Predicted hydrolases of the HAD superfamily.
  
     0.774
gpmB-4
Phosphoglycerate mutase; COG0406 [G] Fructose-2,6-bisphosphatase; Belongs to the phosphoglycerate mutase family.
  
    0.730
efp-2
Protein Translation Elongation Factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
  
    0.481
LSL_1704
COG0474 [P] Cation transport ATPase.
       0.479
LSL_1705
COG0718 [S] Uncharacterized protein conserved in bacteria.
       0.479
LSL_1706
COG0718 [S] Uncharacterized protein conserved in bacteria.
       0.459
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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