Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LSL_1706COG0718 [S] Uncharacterized protein conserved in bacteria. (124 aa)    
Predicted Functional Partners:
LSL_1704
COG0474 [P] Cation transport ATPase.
    0.987
LSL_1705
COG0718 [S] Uncharacterized protein conserved in bacteria.
 
   
0.923
LSL_0169
Lead, cadmium, zinc and mercury transporting ATPase; COG0474 [P] Cation transport ATPase.
 
    0.909
LSL_1639
COG0474 [P] Cation transport ATPase.
 
    0.893
LSL_1707
COG1929 [G] Glycerate kinase; Belongs to the glycerate kinase type-1 family.
       0.503
gpmB-4
Phosphoglycerate mutase; COG0406 [G] Fructose-2,6-bisphosphatase; Belongs to the phosphoglycerate mutase family.
       0.484
LSL_1702
Hydrolase, HAD superfamily; COG0561 [R] Predicted hydrolases of the HAD superfamily.
       0.459
LSL_1318
CopAB ATPases metal-fist type repressor; COG1395 [K] Predicted transcriptional regulator.
       0.415
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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