STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSL_1711Transcriptional regulator, LacI family; COG1522 [K] Transcriptional regulators. (330 aa)    
Predicted Functional Partners:
scrB
Sucrose-6-phosphate hydrolase; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family.
 
  
 0.878
LSL_1713
COG2893 [G] Phosphotransferase system, mannose/fructose-specific component IIA.
 
     0.834
LSL_1712
Oligo-1,6-glucosidase; COG0366 [G] Glycosidases.
  
  
 0.804
galR
Galactose operon repressor; COG1522 [K] Transcriptional regulators.
  
   
 0.784
malR
Maltose operon transcriptional repressor; COG1522 [K] Transcriptional regulators.
  
     0.773
LSL_1715
PTS system, mannose-specific IIC component; COG3715 [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC.
 
    0.748
LSL_1714
PTS system, mannose-specific IID component; COG3716 [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID.
 
    0.744
lacZ
COG3250 [G] Beta-galactosidase/beta-glucuronidase.
     
 0.727
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
  
 0.706
LSL_1716
PTS system, mannose-specific IIAB component; COG3444 [G] Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB.
       0.704
Your Current Organism:
Lactobacillus salivarius
NCBI taxonomy Id: 362948
Other names: L. salivarius UCC118, Lactobacillus salivarius UCC118, Lactobacillus salivarius str. UCC118, Lactobacillus salivarius strain UCC118, Lactobacillus salivarius subsp. salivarius UCC118
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