STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gvpMGas-vesicle-associated protein GvpM. (72 aa)    
Predicted Functional Partners:
gvpL
Gas-vesicle-associated protein GvpL.
     
 0.857
gvpG
Gas-vesicle-associated protein GvpG.
     
 0.698
gvpF
Gas-vesicle-associated protein GvpF.
     
 0.678
gvpK
Gas-vesicle operon protein GvpK.
     
 0.664
gvpI
Gas-vesicle operon protein GvpI.
     
 0.660
gvpJ
Gas-vesicle-associated protein GvpJ; Gas vesicles are small, hollow, gas filled protein structures that are found in several microbial planktonic microorganisms. They allow the positioning of the organism at the favorable depth for growth.
     
0.587
ridA1
Enamine/imine deaminase; Product: IS1341-type transposase (nonfunctional); gene is interrupted (insert,frameshift,in-frame stop) and is truncated at the N-terminus.
       0.429
gvpO
Gas-vesicle operon protein GvpO; Locus_tag: HQ_1778B; product: IS200-type transposase HqIRS89 (nonfunctional); gene is interrupted (frameshift,in-frame stop) and has been targetted by a mobile genetic element.
     
 0.412
Your Current Organism:
Haloquadratum walsbyi DSM 16790
NCBI taxonomy Id: 362976
Other names: H. walsbyi DSM 16790, Haloquadratum walsbyi str. DSM 16790, Haloquadratum walsbyi strain DSM 16790
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.