STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rtcBtRNA-splicing ligase RtcB. (481 aa)    
Predicted Functional Partners:
HQ_3027A
Uncharacterized protein.
  
    0.537
arf1
Peptide chain release factor aRF-1; Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA.
  
    0.537
HQ_1921A
Uncharacterized protein.
  
    0.513
bcp1
Peroxiredoxin.
 
     0.490
fib
Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase; Involved in pre-rRNA and tRNA processing. Utilizes the methyl donor S-adenosyl-L-methionine to catalyze the site-specific 2'-hydroxyl methylation of ribose moieties in rRNA and tRNA. Site specificity is provided by a guide RNA that base pairs with the substrate. Methylation occurs at a characteristic distance from the sequence involved in base pairing with the guide RNA; Belongs to the methyltransferase superfamily. Fibrillarin family.
   
 0.439
tif2a
Translation initiation factor aIF-2 alpha subunit.
   
  
 0.435
HQ_1919A
Polyamine aminopropyltransferase.
  
     0.426
HQ_2388A
ThpR domain protein.
     
 0.426
capA
CapA domain protein; Product: uncharacterized protein (nonfunctional); gene is truncated at the N-terminus.
 
     0.426
HQ_2439A
Major facilitator superfamily transport protein; Locus_tag: HQ_2437B; gene has been targetted by a mobile genetic element and is truncated at the N- and C-terminus; product: IS200-type transposase HqIRS115 (nonfunctional).
 
     0.424
Your Current Organism:
Haloquadratum walsbyi DSM 16790
NCBI taxonomy Id: 362976
Other names: H. walsbyi DSM 16790, Haloquadratum walsbyi str. DSM 16790, Haloquadratum walsbyi strain DSM 16790
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.