STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
livJ7ABC-type transport system periplasmic substrate-binding protein (probable substrate branched-chain amino acids). (434 aa)    
Predicted Functional Partners:
livH7
ABC-type transport system permease protein (probable substrate branched-chain amino acids).
 
 
 0.989
livM7
ABC-type transport system permease protein (probable substrate branched-chain amino acids).
 
 
 0.975
livM3
ABC-type transport system permease protein (probable substrate branched-chain amino acids).
 
  
 0.803
livG4
ABC-type transport system ATP-binding protein (probable substrate branched-chain amino acids).
 
  
 0.779
livG3
ABC-type transport system ATP-binding protein (probable substrate branched-chain amino acids).
 
  
 0.771
HQ_3476A
ABC-type transport system permease protein.
     
 0.770
livM4
ABC-type transport system permease protein (probable substrate branched-chain amino acids).
 
  
 0.763
livH3
ABC-type transport system permease protein (probable substrate branched-chain amino acids).
 
  
 0.762
livG7
Product: ABC-type transport system ATP-binding protein (probable substrate branched-chain amino acids) (nonfunctional); gene: livF7; gene has an in-frame stop codon.
 
  
 0.757
livG6
ABC-type transport system ATP-binding protein (probable substrate branched-chain amino acids).
 
  
 0.734
Your Current Organism:
Haloquadratum walsbyi DSM 16790
NCBI taxonomy Id: 362976
Other names: H. walsbyi DSM 16790, Haloquadratum walsbyi str. DSM 16790, Haloquadratum walsbyi strain DSM 16790
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.