STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LI0082Unknown conserved protein. (364 aa)    
Predicted Functional Partners:
kpsF
FOG: CBS domain; Belongs to the SIS family. GutQ/KpsF subfamily.
       0.746
LI0197
Similar to endo-1,4-beta-xylanase.
  
     0.655
LI0050
Uncharacterized protein involved in outer membrane biogenesis.
 
     0.638
LI0137
Putative integral membrane protein.
  
     0.504
LI1008
Hypothetical protein.
  
     0.487
LI1074
RecB family exonuclease.
  
     0.446
LI0552
Signal transduction histidine kinase.
  
     0.445
LI0389
Modification methylase BepI (Cytosine-specific methyltransferase BepI).
   
    0.426
Your Current Organism:
Lawsonia intracellularis
NCBI taxonomy Id: 363253
Other names: L. intracellularis PHE/MN1-00, Lawsonia intracellularis PHE/MN1-00, Lawsonia intracellularis str. PHE/MN1-00, Lawsonia intracellularis strain PHE/MN1-00
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.