STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfaF/rfaQADP-heptose:LPS heptosyltransferase. (347 aa)    
Predicted Functional Partners:
rfaF-2
ADP-heptose:LPS heptosyltransferase II.
 
 
0.960
kdtA
3-deoxy-D-manno-octulosonic-acid transferase; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
  
 0.957
LI0846
Lipopolysaccharide core biosynthesis protein RfaG (Glucosyltransferase I).
 
 
  0.941
rfaQ
ADP-heptose:LPS heptosyltransferase.
 
  
 0.869
lgtF
Glycosyltransferases involved in cell wall biogenesis.
  
 0.844
LI0816
ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase.
 
  
 0.782
LI0569
ADP-heptose:LPS heptosyltransferase.
  
     0.648
tagD
Glycerol-3-phosphate cytidyltransferase.
 
  
 0.636
LI0319
ADP-heptose:LPS heptosyltransferase.
  
     0.632
rfaF
ADP-heptose:LPS heptosyltransferase II.
 
  
0.622
Your Current Organism:
Lawsonia intracellularis
NCBI taxonomy Id: 363253
Other names: L. intracellularis PHE/MN1-00, Lawsonia intracellularis PHE/MN1-00, Lawsonia intracellularis str. PHE/MN1-00, Lawsonia intracellularis strain PHE/MN1-00
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