Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LI0394 | LI0395 | LI0394 | LI0395 | Hypothetical protein. | Cell division protein FtsI/penicillin-binding protein 2. | 0.800 |
LI0394 | LI0397 | LI0394 | LI0397 | Hypothetical protein. | Integral membrane protein CcmA involved in cell shape determination. | 0.666 |
LI0394 | LI0398 | LI0394 | LI0398 | Hypothetical protein. | F0F1-type ATP synthase, subunit b; Belongs to the ATPase B chain family. | 0.475 |
LI0394 | atpB | LI0394 | LI0403 | Hypothetical protein. | Proton ATPase beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family. | 0.402 |
LI0394 | atpC | LI0394 | LI0402 | Hypothetical protein. | F0F1-type ATP synthase, subunit c; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. | 0.436 |
LI0394 | atpD | LI0394 | LI0401 | Hypothetical protein. | F1F0-ATPase alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. | 0.438 |
LI0394 | atpE | LI0394 | LI0400 | Hypothetical protein. | F1F0-ATPase delta subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation; Belongs to the ATPase delta chain family. | 0.438 |
LI0394 | atpF | LI0394 | LI0399 | Hypothetical protein. | F0F1-type ATP synthase, subunit b; Belongs to the ATPase B chain family. | 0.438 |
LI0394 | mreC | LI0394 | LI0393 | Hypothetical protein. | Cell shape-determining protein; Involved in formation and maintenance of cell shape. | 0.800 |
LI0394 | rodA | LI0394 | LI0396 | Hypothetical protein. | Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily. | 0.730 |
LI0395 | LI0394 | LI0395 | LI0394 | Cell division protein FtsI/penicillin-binding protein 2. | Hypothetical protein. | 0.800 |
LI0395 | LI0397 | LI0395 | LI0397 | Cell division protein FtsI/penicillin-binding protein 2. | Integral membrane protein CcmA involved in cell shape determination. | 0.668 |
LI0395 | LI0398 | LI0395 | LI0398 | Cell division protein FtsI/penicillin-binding protein 2. | F0F1-type ATP synthase, subunit b; Belongs to the ATPase B chain family. | 0.506 |
LI0395 | atpB | LI0395 | LI0403 | Cell division protein FtsI/penicillin-binding protein 2. | Proton ATPase beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family. | 0.500 |
LI0395 | atpC | LI0395 | LI0402 | Cell division protein FtsI/penicillin-binding protein 2. | F0F1-type ATP synthase, subunit c; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex. | 0.490 |
LI0395 | atpD | LI0395 | LI0401 | Cell division protein FtsI/penicillin-binding protein 2. | F1F0-ATPase alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit. Belongs to the ATPase alpha/beta chains family. | 0.487 |
LI0395 | atpE | LI0395 | LI0400 | Cell division protein FtsI/penicillin-binding protein 2. | F1F0-ATPase delta subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation; Belongs to the ATPase delta chain family. | 0.494 |
LI0395 | atpF | LI0395 | LI0399 | Cell division protein FtsI/penicillin-binding protein 2. | F0F1-type ATP synthase, subunit b; Belongs to the ATPase B chain family. | 0.485 |
LI0395 | mreC | LI0395 | LI0393 | Cell division protein FtsI/penicillin-binding protein 2. | Cell shape-determining protein; Involved in formation and maintenance of cell shape. | 0.970 |
LI0395 | rodA | LI0395 | LI0396 | Cell division protein FtsI/penicillin-binding protein 2. | Rod shape-determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily. | 0.999 |
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