STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yscVPutative type III secretion pore protein. (700 aa)    
Predicted Functional Partners:
yscT
Type III secretion component protein SctT.
 
 
 0.992
yscS
Probable translocation protein in type III secretion.
 
 
 0.987
SctR
Translocation protein in type III secretion.
 
 
 0.980
flhB
Flagellar biosynthesis pathway, component FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family.
 
 0.948
yscU
Translocation protein in type III secretion.
 
 0.946
nolT
LscJ.
 
 
 0.942
YscC
Putative type III secretion protein YscC.
 
 
 0.942
YscJ
Putative type III secretion protein.
 
 
 0.941
LI1157
Regulatory protein PcrH.
 
    0.888
sctN
Type III secretion component protein SctN.
 
  
 0.877
Your Current Organism:
Lawsonia intracellularis
NCBI taxonomy Id: 363253
Other names: L. intracellularis PHE/MN1-00, Lawsonia intracellularis PHE/MN1-00, Lawsonia intracellularis str. PHE/MN1-00, Lawsonia intracellularis strain PHE/MN1-00
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.