STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yscTType III secretion component protein SctT. (271 aa)    
Predicted Functional Partners:
yscS
Probable translocation protein in type III secretion.
 
 
 0.996
SctR
Translocation protein in type III secretion.
 
 
 0.994
yscV
Putative type III secretion pore protein.
 
 
 0.992
yscU
Translocation protein in type III secretion.
 
 0.981
YscC
Putative type III secretion protein YscC.
 
 
 0.973
nolT
LscJ.
 
 
 0.949
YscJ
Putative type III secretion protein.
 
 
 0.948
LI1157
Regulatory protein PcrH.
 
    0.885
YscL
Putative type III secretion protein.
 
  
 0.884
sctL
Type III secretion protein, YopL family putative type III secretion protein.
 
  
 0.878
Your Current Organism:
Lawsonia intracellularis
NCBI taxonomy Id: 363253
Other names: L. intracellularis PHE/MN1-00, Lawsonia intracellularis PHE/MN1-00, Lawsonia intracellularis str. PHE/MN1-00, Lawsonia intracellularis strain PHE/MN1-00
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.