Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LI0122 | LI0614 | LI0122 | LI0614 | Cytochrome c biogenesis protein. | Thiol-disulfide isomerase and thioredoxins. | 0.507 |
LI0122 | LI0708 | LI0122 | LI0708 | Cytochrome c biogenesis protein. | Protein-disulfide isomerase. | 0.442 |
LI0463 | LI0708 | LI0463 | LI0708 | Hypothetical protein. | Protein-disulfide isomerase. | 0.563 |
LI0463 | dsbD | LI0463 | LI0433 | Hypothetical protein. | Uncharacterized protein predicted to be involved in C-type cytochrome biogenesis. | 0.456 |
LI0463 | nadh | LI0463 | LI0651 | Hypothetical protein. | Rhodanese-related sulfurtransferase. | 0.942 |
LI0614 | LI0122 | LI0614 | LI0122 | Thiol-disulfide isomerase and thioredoxins. | Cytochrome c biogenesis protein. | 0.507 |
LI0614 | LI0708 | LI0614 | LI0708 | Thiol-disulfide isomerase and thioredoxins. | Protein-disulfide isomerase. | 0.601 |
LI0614 | dsbD | LI0614 | LI0433 | Thiol-disulfide isomerase and thioredoxins. | Uncharacterized protein predicted to be involved in C-type cytochrome biogenesis. | 0.953 |
LI0614 | nadh | LI0614 | LI0651 | Thiol-disulfide isomerase and thioredoxins. | Rhodanese-related sulfurtransferase. | 0.664 |
LI0708 | LI0122 | LI0708 | LI0122 | Protein-disulfide isomerase. | Cytochrome c biogenesis protein. | 0.442 |
LI0708 | LI0463 | LI0708 | LI0463 | Protein-disulfide isomerase. | Hypothetical protein. | 0.563 |
LI0708 | LI0614 | LI0708 | LI0614 | Protein-disulfide isomerase. | Thiol-disulfide isomerase and thioredoxins. | 0.601 |
LI0708 | dsbD | LI0708 | LI0433 | Protein-disulfide isomerase. | Uncharacterized protein predicted to be involved in C-type cytochrome biogenesis. | 0.931 |
LI0708 | fliC-2 | LI0708 | LI0710 | Protein-disulfide isomerase. | Flagellin and related hook-associated proteins; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. | 0.456 |
LI0708 | hypF | LI0708 | LI0707 | Protein-disulfide isomerase. | Hydrogenase maturation factor; Involved in the maturation of [NiFe] hydrogenases. Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of [NiFe]-hydrogenases. HypF functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide. | 0.485 |
LI0708 | nadh | LI0708 | LI0651 | Protein-disulfide isomerase. | Rhodanese-related sulfurtransferase. | 0.507 |
LI0708 | polB-2 | LI0708 | LI0102 | Protein-disulfide isomerase. | DNA polymerase I-3'-5' exonuclease and polymerase domains. | 0.559 |
LI0708 | ribF | LI0708 | LI0709 | Protein-disulfide isomerase. | FAD synthase; Belongs to the ribF family. | 0.530 |
LI0708 | sigB | LI0708 | LI0613 | Protein-disulfide isomerase. | DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.409 |
dsbD | LI0463 | LI0433 | LI0463 | Uncharacterized protein predicted to be involved in C-type cytochrome biogenesis. | Hypothetical protein. | 0.456 |
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