STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LI0847Conserved hypothetical protein. (264 aa)    
Predicted Functional Partners:
LI0864
NA.
 
     0.799
cbiM
CBIM protein.
 
     0.716
LI0862
NA.
 
   
 0.682
nar
Permeases of the major facilitator superfamily.
  
     0.541
LI0583
Hypothetical protein.
  
     0.469
LI0846
Lipopolysaccharide core biosynthesis protein RfaG (Glucosyltransferase I).
       0.465
dacC
D-alanyl-D-alanine carboxypeptidase.
  
     0.460
LI0050
Uncharacterized protein involved in outer membrane biogenesis.
  
     0.459
LI1173
3264: Small-conductance mechanosensitive channel.
  
     0.457
LI0552
Signal transduction histidine kinase.
  
     0.453
Your Current Organism:
Lawsonia intracellularis
NCBI taxonomy Id: 363253
Other names: L. intracellularis PHE/MN1-00, Lawsonia intracellularis PHE/MN1-00, Lawsonia intracellularis str. PHE/MN1-00, Lawsonia intracellularis strain PHE/MN1-00
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.