Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
LI0050 | LI0552 | Uncharacterized protein involved in outer membrane biogenesis. | Signal transduction histidine kinase. | 0.667 |
LI0050 | LI0945 | Uncharacterized protein involved in outer membrane biogenesis. | Predicted dienelactone hydrolase. | 0.454 |
LI0050 | LI1074 | Uncharacterized protein involved in outer membrane biogenesis. | RecB family exonuclease. | 0.738 |
LI0552 | LI0050 | Signal transduction histidine kinase. | Uncharacterized protein involved in outer membrane biogenesis. | 0.667 |
LI0552 | LI0945 | Signal transduction histidine kinase. | Predicted dienelactone hydrolase. | 0.640 |
LI0552 | LI1074 | Signal transduction histidine kinase. | RecB family exonuclease. | 0.512 |
LI0945 | LI0050 | Predicted dienelactone hydrolase. | Uncharacterized protein involved in outer membrane biogenesis. | 0.454 |
LI0945 | LI0552 | Predicted dienelactone hydrolase. | Signal transduction histidine kinase. | 0.640 |
LI0945 | LI1074 | Predicted dienelactone hydrolase. | RecB family exonuclease. | 0.481 |
LI1074 | LI0050 | RecB family exonuclease. | Uncharacterized protein involved in outer membrane biogenesis. | 0.738 |
LI1074 | LI0552 | RecB family exonuclease. | Signal transduction histidine kinase. | 0.512 |
LI1074 | LI0945 | RecB family exonuclease. | Predicted dienelactone hydrolase. | 0.481 |