Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
LI1157 | YscC | LI1157 | LI1160 | Regulatory protein PcrH. | Putative type III secretion protein YscC. | 0.863 |
LI1157 | YscJ | LI1157 | LI1163 | Regulatory protein PcrH. | Putative type III secretion protein. | 0.907 |
LI1157 | YscL | LI1157 | LI1164 | Regulatory protein PcrH. | Putative type III secretion protein. | 0.875 |
LI1157 | nolT | LI1157 | LI0543 | Regulatory protein PcrH. | LscJ. | 0.907 |
LI1157 | sctL | LI1157 | LI0541 | Regulatory protein PcrH. | Type III secretion protein, YopL family putative type III secretion protein. | 0.873 |
LI1157 | sctN | LI1157 | LI0540 | Regulatory protein PcrH. | Type III secretion component protein SctN. | 0.761 |
LI1157 | yscT | LI1157 | LI0550 | Regulatory protein PcrH. | Type III secretion component protein SctT. | 0.885 |
LI1157 | yscV | LI1157 | LI0548 | Regulatory protein PcrH. | Putative type III secretion pore protein. | 0.888 |
LI1166 | YscC | LI1166 | LI1160 | Putative translocation protein in type III secretion. | Putative type III secretion protein YscC. | 0.625 |
LI1166 | YscJ | LI1166 | LI1163 | Putative translocation protein in type III secretion. | Putative type III secretion protein. | 0.736 |
LI1166 | YscL | LI1166 | LI1164 | Putative translocation protein in type III secretion. | Putative type III secretion protein. | 0.871 |
LI1166 | fliI | LI1166 | LI0854 | Putative translocation protein in type III secretion. | Flagellar biosynthesis/type III secretory pathway ATPase. | 0.687 |
LI1166 | sctL | LI1166 | LI0541 | Putative translocation protein in type III secretion. | Type III secretion protein, YopL family putative type III secretion protein. | 0.688 |
LI1166 | sctN | LI1166 | LI0540 | Putative translocation protein in type III secretion. | Type III secretion component protein SctN. | 0.687 |
LI1166 | yscT | LI1166 | LI0550 | Putative translocation protein in type III secretion. | Type III secretion component protein SctT. | 0.513 |
LI1166 | yscV | LI1166 | LI0548 | Putative translocation protein in type III secretion. | Putative type III secretion pore protein. | 0.508 |
YscC | LI1157 | LI1160 | LI1157 | Putative type III secretion protein YscC. | Regulatory protein PcrH. | 0.863 |
YscC | LI1166 | LI1160 | LI1166 | Putative type III secretion protein YscC. | Putative translocation protein in type III secretion. | 0.625 |
YscC | YscJ | LI1160 | LI1163 | Putative type III secretion protein YscC. | Putative type III secretion protein. | 0.965 |
YscC | YscL | LI1160 | LI1164 | Putative type III secretion protein YscC. | Putative type III secretion protein. | 0.907 |
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