Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
PF14_0175 | PF3D7_0705600 | Q8ILR9 | C0H4K7 | Protein PF14_0175. | RNA helicase, putative. | 0.477 |
PF14_0175 | PF3D7_0915100 | Q8ILR9 | Q8I301 | Protein PF14_0175. | SUMO-conjugating enzyme UBC9; Belongs to the ubiquitin-conjugating enzyme family. | 0.571 |
PF14_0175 | PFE0570w | Q8ILR9 | Q8I3Z1 | Protein PF14_0175. | MATH and LRR domain-containing protein PFE0570w. | 0.793 |
PF14_0175 | SETVS | Q8ILR9 | Q8IE95 | Protein PF14_0175. | Variant-silencing SET domain-containing protein; Histone methyltransferase that specifically represses expression of the surface antigen-coding var genes by mediating trimethylation of 'Lys-36' of histone H3 (H3K36me3) on var genes. SETVS-dependent H3K36me3 is specifically involved in var genes silencing, a central step malaria pathogenesis: each parasite contains 60 distinct var genes that each code for a different PfEMP1 protein. During infection, the clonal parasite population expresses only 1 gene at a time, while the 59 other var genes are silenced. The parasite then switches to t [...] | 0.579 |
PF3D7_0509400 | PF3D7_0705600 | Q8I410 | C0H4K7 | DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | RNA helicase, putative. | 0.756 |
PF3D7_0509400 | PFE0570w | Q8I410 | Q8I3Z1 | DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | MATH and LRR domain-containing protein PFE0570w. | 0.546 |
PF3D7_0509400 | SETVS | Q8I410 | Q8IE95 | DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | Variant-silencing SET domain-containing protein; Histone methyltransferase that specifically represses expression of the surface antigen-coding var genes by mediating trimethylation of 'Lys-36' of histone H3 (H3K36me3) on var genes. SETVS-dependent H3K36me3 is specifically involved in var genes silencing, a central step malaria pathogenesis: each parasite contains 60 distinct var genes that each code for a different PfEMP1 protein. During infection, the clonal parasite population expresses only 1 gene at a time, while the 59 other var genes are silenced. The parasite then switches to t [...] | 0.692 |
PF3D7_0629800 | PF3D7_0811000 | C6KTD3 | Q8IAU5 | Cullin-like protein, putative; Belongs to the cullin family. | Cullin-1, putative; Belongs to the cullin family. | 0.400 |
PF3D7_0629800 | PF3D7_0915100 | C6KTD3 | Q8I301 | Cullin-like protein, putative; Belongs to the cullin family. | SUMO-conjugating enzyme UBC9; Belongs to the ubiquitin-conjugating enzyme family. | 0.580 |
PF3D7_0629800 | PFE0570w | C6KTD3 | Q8I3Z1 | Cullin-like protein, putative; Belongs to the cullin family. | MATH and LRR domain-containing protein PFE0570w. | 0.896 |
PF3D7_0705600 | PF14_0175 | C0H4K7 | Q8ILR9 | RNA helicase, putative. | Protein PF14_0175. | 0.477 |
PF3D7_0705600 | PF3D7_0509400 | C0H4K7 | Q8I410 | RNA helicase, putative. | DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.756 |
PF3D7_0705600 | PFE0570w | C0H4K7 | Q8I3Z1 | RNA helicase, putative. | MATH and LRR domain-containing protein PFE0570w. | 0.506 |
PF3D7_0705600 | SETVS | C0H4K7 | Q8IE95 | RNA helicase, putative. | Variant-silencing SET domain-containing protein; Histone methyltransferase that specifically represses expression of the surface antigen-coding var genes by mediating trimethylation of 'Lys-36' of histone H3 (H3K36me3) on var genes. SETVS-dependent H3K36me3 is specifically involved in var genes silencing, a central step malaria pathogenesis: each parasite contains 60 distinct var genes that each code for a different PfEMP1 protein. During infection, the clonal parasite population expresses only 1 gene at a time, while the 59 other var genes are silenced. The parasite then switches to t [...] | 0.719 |
PF3D7_0811000 | PF3D7_0629800 | Q8IAU5 | C6KTD3 | Cullin-1, putative; Belongs to the cullin family. | Cullin-like protein, putative; Belongs to the cullin family. | 0.400 |
PF3D7_0811000 | PF3D7_0915100 | Q8IAU5 | Q8I301 | Cullin-1, putative; Belongs to the cullin family. | SUMO-conjugating enzyme UBC9; Belongs to the ubiquitin-conjugating enzyme family. | 0.580 |
PF3D7_0811000 | PFE0570w | Q8IAU5 | Q8I3Z1 | Cullin-1, putative; Belongs to the cullin family. | MATH and LRR domain-containing protein PFE0570w. | 0.893 |
PF3D7_0915100 | PF14_0175 | Q8I301 | Q8ILR9 | SUMO-conjugating enzyme UBC9; Belongs to the ubiquitin-conjugating enzyme family. | Protein PF14_0175. | 0.571 |
PF3D7_0915100 | PF3D7_0629800 | Q8I301 | C6KTD3 | SUMO-conjugating enzyme UBC9; Belongs to the ubiquitin-conjugating enzyme family. | Cullin-like protein, putative; Belongs to the cullin family. | 0.580 |
PF3D7_0915100 | PF3D7_0811000 | Q8I301 | Q8IAU5 | SUMO-conjugating enzyme UBC9; Belongs to the ubiquitin-conjugating enzyme family. | Cullin-1, putative; Belongs to the cullin family. | 0.580 |
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