STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PF3D7_1207100Small subunit rRNA processing factor, putative. (840 aa)    
Predicted Functional Partners:
PF3D7_1418900
ATP-dependent RNA helicase DBP4, putative; Belongs to the DEAD box helicase family.
   
 
 0.997
PF3D7_1358100
Sas10 domain-containing protein, putative.
   
 
 0.995
PF3D7_1307100
U3 small nucleolar RNA-associated protein 6, putative.
   
 
 0.994
PF3D7_1224400
WD repeat-containing protein, putative.
   
 
 0.993
PF3D7_1422400
Uncharacterized protein.
   
 
 0.993
PF3D7_0720100
Pre-rRNA-processing protein ESF2, putative.
   
 
 0.990
PF3D7_1020700
RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires a tRNA-binding adapter protein for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.
   
 
 0.990
PF3D7_0801500
Nucleolar protein 10, putative.
   
 
 0.911
PF3D7_0218400
ATP-dependent RNA helicase DDX47, putative; Belongs to the DEAD box helicase family.
   
 
 0.907
PF3D7_0405000
ATP-dependent RNA helicase DDX51, putative.
   
 
 0.907
Your Current Organism:
Plasmodium falciparum
NCBI taxonomy Id: 36329
Other names: P. falciparum 3D7, Plasmodium falciparum (isolate 3D7), Plasmodium falciparum 3D7
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