STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KIC64926.1Dolichyl-phosphate beta-D-mannosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (238 aa)    
Predicted Functional Partners:
KIC61476.1
Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.897
KIC64927.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.795
tgt
Queuine tRNA-ribosyltransferase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form t [...]
       0.795
KIC65238.1
Permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.765
KIC65236.1
uroporphyrinogen-III synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.667
KIC65237.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.546
KIC64363.1
Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.537
KIC64237.1
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
  0.523
KIC65242.1
Glycosyl transferase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.511
KIC61843.1
Phosphoglucosamine mutase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.468
Your Current Organism:
Chryseobacterium taiwanense
NCBI taxonomy Id: 363331
Other names: BCRC 17412, C. taiwanense, Chryseobacterium taiwanense Tai et al. 2006 emend. Montero-Calasanz et al. 2014, Chryseobacterium taiwanense Tai et al. 2006 emend. Wu et al. 2013, IAM 15317, JCM 21767, LMG 23355, LMG:23355, strain Soil-3-27
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