STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KIC62839.1Dioxygenase; Seems to be involved in biofilm formation; in asymptomatic bacteriuria E. coli strains 83972 and VR50, the ygiD gene is upregulated during biofilm formation in urine; Derived by automated computational analysis using gene prediction method: Protein Homology. (277 aa)    
Predicted Functional Partners:
KIC62734.1
Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.643
KIC65179.1
phenylacetate-CoA oxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.633
KIC63018.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.633
KIC62733.1
Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.585
KIC64739.1
Flavin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.489
KIC62735.1
AraC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.430
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
     
 0.421
Your Current Organism:
Chryseobacterium taiwanense
NCBI taxonomy Id: 363331
Other names: BCRC 17412, C. taiwanense, Chryseobacterium taiwanense Tai et al. 2006 emend. Montero-Calasanz et al. 2014, Chryseobacterium taiwanense Tai et al. 2006 emend. Wu et al. 2013, IAM 15317, JCM 21767, LMG 23355, LMG:23355, strain Soil-3-27
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