STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KIC62554.1Para-nitrobenzyl esterase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the type-B carboxylesterase/lipase family. (443 aa)    
Predicted Functional Partners:
rpsD
30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
    
  0.988
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
    
  0.934
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
  
 
 0.829
KIC65225.1
Malic enzyme; NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.721
KIC63866.1
Peptidase M28; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.704
KIC64362.1
Peptidase M28; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.696
KIC64938.1
Peptidase M28; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.641
KIC62974.1
Leucyl aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.641
KIC63042.1
Peptidase M28; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.641
KIC62087.1
Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
  
 
 0.541
Your Current Organism:
Chryseobacterium taiwanense
NCBI taxonomy Id: 363331
Other names: BCRC 17412, C. taiwanense, Chryseobacterium taiwanense Tai et al. 2006 emend. Montero-Calasanz et al. 2014, Chryseobacterium taiwanense Tai et al. 2006 emend. Wu et al. 2013, IAM 15317, JCM 21767, LMG 23355, LMG:23355, strain Soil-3-27
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